1) How does the body differentiate between self and non-self non-cellular objects (i.e proteins) seeing as proteins lack MHC1 markers, I can't see how they would be distinguished.
2) Are cytotoxic T cells stimulated to divide the same way that B cells are?
1. free proteins can still be engulfed by APC which regularly just consume proteins from their surroundings. As such, they can be presented to elicit an adaptive immune response just like any other antigen would. If this is a self-antigen, no immune response would result as the body's tolerance systems would mean that all B and T cells that are self-reactive are killed via apoptosis.
2. Their activation is a bit different, but for our purposes, I think you can say yes.
1) Does founder effect result in speciation always?
2) Is competitive inhibition always go with reversible inhibition and non-competitive irreversible?
3) Describe a technique that could be used to compare the sequence of the mitochondrial DNA to confirm the arrangement of the phylogenetic tree?
Would DNA sequencing be an option? The more similar the sequence of nucleotides, the less time since divergence from common ancestor thus the more closely related they are. The only answer given was DNA hybridization
1. Given enough time and assuming no gene flow occurs between the founder population and the parent population then speciation would likely occur. I doubt that you will be asked this question though.
2. I am not sure about this.
3. For these questions I would always write DNA hybridization as I am specifically mentioned as a tool in the study design, however, sequencing would be correct.